PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G250800.1
Common NameB456_013G250800, LOC105781235
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 325aa    MW: 36735.9 Da    PI: 6.7725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G250800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-05163182120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Gorai.013G250800.1 163 FSCPLCFKTFNRYNNMQMHM 182
                         89*****************9 PP

2zf-C2H2163.5e-05247269123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +CgksF  + + ++H +++
  Gorai.013G250800.1 247 FMCRKCGKSFAVRGDWRTHEKNC 269
                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66163190IPR007087Zinc finger, C2H2
SMARTSM003550.61163185IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5163182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SuperFamilySSF576678.59E-6228267No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4234267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808247267IPR007087Zinc finger, C2H2
SMARTSM0035537247267IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSDSDPYSNY FNGWFNLNPF NPFFPSPSSS TPPSLAPING YNGFPSSPPL KEALPLLPTR  60
HDEEQQQQQQ EDSSSFSAAM EMEKKSLEDN DETLTVALHL GLPSPSSCSN DLMMVSSRFS  120
PQEVTDDKED HTIVASEYLS NTLNKGQYWI PTPSQILIGP TQFSCPLCFK TFNRYNNMQM  180
HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCRNNI DHPRSKPLKD FRTLQTHYKR  240
KHGIKAFMCR KCGKSFAVRG DWRTHEKNCG KLWYCSCGSD FKHKRSLKDH IRAFGNGHSA  300
YGIDSFDEED EPGSDNEQDN ESSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461234.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-135ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D2SJX90.0A0A0D2SJX9_G
STRINGVIT_06s0004g01870.t011e-159(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]